bioinformatics

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week 9 websites

http://www.rcsb.org/pdb/experimental_methods.htm

stochastic protein modeling

http://depts.washington.edu/bakerpg/

http://www.bioinfo.rpi.edu/~bystrc/hmmstr/server.php

Energy minimization

http://boltzmann.ucsf.edu/predict/predict.html

http://igc.ethz.ch/gromos/

Knowledge-based protein modeling

http://www.expasy.ch/swissmod/course/course-index.htm

SCOP: http://scop.mrc-lmb.cam.ac.uk/scop/

CATH: http://www.biochem.ucl.ac.uk/bsm/cath_new/index.html

I-SITES http://isites.bio.rpi.edu/

LOOPP http://ser-loopp.tc.cornell.edu/loopp.html

NICKA123d http://123d.ncifcrf.gov/123D+.html

3D possm http://www.bmm.icnet.uk/servers/3dpssm/

CPH model http://www.cbs.dtu.dk/services/CPHmodels/

SWISS-MODEL http://www.expasy.ch/swissmod/SWISS-MODEL.html

SWISS-PDB viewer http://www.expasy.ch/spdbv/mainpage.html

Geno3D: http://geno3d-pbil.ibcp.fr/

WebCL : http://cl.sdsc.edu/hm.html

IBM: http://cbcsrv.watson.ibm.com/Tmsa.html

LiveBench http://BioInfo.PL/LiveBench/

CASP http://PredictionCenter.llnl.gov/