bioinformatics

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Week 1 websites

Genbank

http://www.ncbi.nlm.nih.gov

http://www.ddbj.nig.ac.jp

http://www.ebi.ac.uk

other genome databases

http://www.arabidopsis.org/search/

http://www.wormbase.org/

http://www.nal.usda.gov/pgdic/

http://plants.usda.gov/

TIGR: http://www.tigr.org/tdb/

human genes

http://www.ncbi.nlm.nih.gov/Omim

http://bioinformatics.weizmann.ac.il/cards/

http://www.uwcm.ac.uk/uwcm/mg/hgmd0.html

genes in other organisms

http://www.angis.su.oz.au/Databases/BIRX/omia/

http://beangenes.cws.ndsu.nodak.edu

Protein Structure

http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.html

http://gene.stanford.edu/3dsearch

SwissProt: http://www.expasy.ch/prosite/

PDB: http://www.rcsb.org/pdb/

PIR: http://pir.georgetown.edu/pirwww/dbinfo/pirpsd.html

Biochemistry

http://www.genome.ad.jp/kegg/

http://wit.mcs.anl.gov/WIT2/

http://www.ncgr.org/pathdb/

http://www.expasy.org/cgi-bin/search-biochem-index

http://www.brenda.uni-koeln.de/

Microarrays

http://www.ncbi.nlm.nih.gov/geo

http://www.ebi.ac.uk/arrayexpress/

SMD: http://genome-www5.stanford.edu/MicroArray/SMD/

http://www.bio.davidson.edu/projects/GCAT/SMDdirections.html

http://llmpp.nih.gov/lymphoma/

Proteomics

http://www-lmmb.ncifcrf.gov/EP/table2Ddatabases.html

http://www.ebi.ac.uk/proteome/

http://genome-www.stanford.edu/proteinarrays/

http://www.proteome.com/

http://www.wiley.co.uk/wileychi/genomics/proteomics.html

http://www.noble.org/2dpage/search.asp

Metabolomics

http://www.noble.org/plantbio/ms/meta%5Fmain.html

http://gepasi.dbs.aber.ac.uk/dbk/metabol.htm

http://www.mpimp-golm.mpg.de/fiehn/index-e.html

http://cgsc.biology.yale.edu/metab.html