bioinformatics

syllabus

general information

homework

lectures

websites

Will Terzaghi's Homepage

Membership

Login

week 2 websites

http://www.ncbi.nlm.nih.gov/Tools/index.html

http://industry.ebi.ac.uk/~brazma/dm.html

http://bioinformatics.weizmann.ac.il/cards/knowledge.html

http://www.the-data-mine.com/

http://www.digimine.com/usama/datamine/

http://www.kdnuggets.com/software/index.html

http://www.kdnuggets.com/solutions/bioinformatics.html

Companies that make bioinformatics data mining software

http://www.incyte.com/

http://www.x-mine.com/

http://www.incellico.com/

http://www.netid.com/

Companies that use bioinformatics data mining software

http://www.gene.com/gene/research/biotechnology/genomics.jsp

http://www.millennium.com/

http://www.hgsi.com/

Sequence alignment tutorials

http://www.psc.edu/biomed/training/tutorials/sequence/db/index.html

http://www.umanitoba.ca/faculties/afs/plant_science/courses/39_769/lec04/lec04.1.html

http://www.msci.memphis.edu/~giri/compbio/papers/hmmshamir.pdf

http://www.inf.ethz.ch/personal/cannaroz/courses/compbio/week2/week2/week2.html

http://www.ncbi.nlm.nih.gov/Education/BLASTinfo/similarity.html

http://www.ncbi.nlm.nih.gov:80/BLAST/tutorial/Altschul-1.html

Links to Smith-Waterman and FASTA

http://fasta.bioch.virginia.edu/

http://www.ebi.ac.uk/fasta33/

http://www.ddbj.nig.ac.jp

http://workbench.sdsc.edu/

http://www.arabidopsis.org/cgi-bin/fasta/nph-TAIRfasta.pl

http://searchlauncher.bcm.tmc.edu/seq-search/protein-search.html

http://decypher.stanford.edu/index_by_algo.htm

BRCA1 query sequence

dtagynamee svsrekpelt astervnkrm smvvsgltpe efmlvykfar khhitltnliteetthvvmk tdaefvcert lkyflgiagg kwvvsyfwvt qsikerkmln ehdfevrgdvvngrnhqgpk raresqdrki frgleiccyg pftnmptdql ewmvqlcgas vvkelssftlgtgvhpivvv qpdawtedng fhaigqmcea pvvtrewvld svalyqcqel dtylipqiphshy