bioinformatics

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Will Terzaghi's Homepage

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week 3 websites

http://fasta.bioch.virginia.edu/

http://www.ebi.ac.uk/fasta33/

http://www.ddbj.nig.ac.jp

http://workbench.sdsc.edu/

http://www.arabidopsis.org/cgi-bin/fasta/nph-TAIRfasta.pl

http://searchlauncher.bcm.tmc.edu/seq-search/protein-search.html

http://decypher.stanford.edu/index_by_algo.htm

Links to BLAST

NCBI: http://www.ncbi.nlm.nih.gov/BLAST/

DDBJ: http://www.ddbj.nig.ac.jp/

EBI http://www.ebi.ac.uk/blast/index.html

biologist's workbench: http://workbench.sdsc.edu/

http://decypher.stanford.edu/index_by_algo.htm

http://searchlauncher.bcm.tmc.edu/seq-search/protein-search.html

Links to collections of motifs

http://www.ebi.ac.uk/Tools/protein.html

emotif (http://motif.Stanford.EDU/3motif/)

Prints: http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/

Profile Scan: http://hits.isb-sib.ch/cgi-bin/PFSCAN

BLOCKS http://blocks.fhcrc.org/blocks/

Links to structural alignments

VAST http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml

DALI http://www.ebi.ac.uk/dali/

Combinatorial extension http://cl.sdsc.edu/ce.html